thanks for this very quick answer!
the auto iso was never on so that's probably not the reason.
for ACR, yes i'm using it and i was also using those sliders (though i always tried not to exaggerate in using them, i know it can look ugly quite fast).
i suppose this is the canon a log profile by vision color that you were talking about
http://vision-color.com/get-your-vision-picture-style/ ? looks interesting.
with the curves tool, you mean the curves tool within after effects? so i should just import the RAW sequence without any changes about highlights/shadows/blacks/whites and then go on with the curves tool to avoid those weird light shifts? can i still make changes on the other sliders?
for iso in steps 160, 320, 640 etc that's what i first learned to be best, well.. back then i was only shooting h.264 (but if i understand correctly, you're not saying this has anything to do with the exposure changing in my shots). thanks for that information, too.