Let's go on...
I took a look in the Large Fine JPG in the computer and yes, each iso uses TWO lines. So this is impossible to separate using deinterlace... So I did a 50% resize in the image (downscale) to discard half of the lines and the image changed to ONE line per iso as was expected and the deinterlace+interpolation works...
about video: I recorded a RAW video in the 600D using 1728x992 @ 8 fps with dual iso enabled. The DNG sequence in the timeline shows TWO lines per iso, so it will need a downscale to 50% size to make deinterlace works. I can render the DNG sequence into a H264 video file, and then export a jpg sequence from it to test if the compression will retain the lines separation, but before it I have a question:
why using two lines per iso instead of just one in the dual iso video? this would make sense for interlaced footage, but for progressive footage one line per iso would be enough... maybe the reason is to respect the bayer pattern? because bayer pattern is GRGRGR and next line is BGBGBGBG. is this the reason or the reason is just to get a better separation? Maybe in the dual iso h264 video we can use one line per iso because the h264 video is debayered in camera just like the jpg images are... one line per iso would introduce less aliasing in the final result and no need a 50% downscale before doing the deinterlace... share your thoughts...
about color cast in sub-images: it is normal issue due to when you change brightness the perceive of saturation changes. The saturation level is the same in the two sub-images, but less brightness makes the eye to feel there is more saturation and more brightness in the other image makes the eye to perceive there is less saturation. But saturation level is the same and things become ok in the merged image. The look of the low brightness image tends to me more red and the look of the high brightness image tends to be more green, but in the merged image everything becomes ok. No need to worry about this for the h264 dual iso video, after merging the final result will be ok. If a merged preview could be enabled in camera probably it would be ok also...
if a merged preview could be enabled in camera maybe the camera could record it into a h264 video!!! but there will be enough processing power to do it in 1920x1080 @24fps ? And using two lines per iso a 50% downscale would be a must before deinterlace+interpolate+merge, but using one line per iso would not need the 50% downscale... or another algorithm for deinterlace would be needed, probably the implemented deinterlace method in the CR2HDR.exe is already doing the deinterlace for two lines per iso or is it doing a 50% downscale?...
More about preview in camera: when looking at the dual iso in live view, I perceived that the high iso prevails over the low iso image, maybe due to more light on it, and I cannot judge the exposure for the low iso. I need to disable the dual iso module to see each iso and find the better iso combination before enablind the dual iso for recording. this way I can get great exposue for the low and high iso lines, it is impossible to set the exposure with dual iso enabled. Also, the white balance in raw recording is wrong at the moment of recording, colors need to be tweaked in ACR when importing the DNG sequence to timeline. Maybe the color cast in dual iso preview is just because the raw recording cannot show correct colors in live view, I always see some magenta cast when previewing dual iso in the lcd. I think this is not a big problem, I can deal with it.