On 650D/700D first you need to select a stable RAW video mode, all presets in crop_rec "Crop mode" are stable (doesn't produce pink frames) with/without Dual ISO, also the normal Canon modes like (1080p, 720p, movie crop mode, x5 mode).
But if you are using arbitrary resolutions with crop_new (Crop mode V2), some settings would have pink/corrupted frames either with or without Dual ISO. crop_new isn't well fine-tuned yet, some settings will work without any problem like my favourite 1736x2214 1x3 @ 23.976 FPS (10-bit lossless), never had a problem with this mode on my 700D, also made a lot of tests with Dual ISO, this RAW video mode is stable.
Reducing FPS or RAW resolution a little in crop_new "Crop mode V2" should help to eliminate on pink/corrupted frames issues with your custom settings (don't push it to the limits).
But unfortunately currently I am not using Dual ISO much on 700D because it has
flickering issue on most RAW modes, I tested MLVApp, latest version of cr2hdr (on linux), both produce the same problem.
Some modes does work without the flickering issue like 4.5K 1x3 in "Crop mode".