I wanted to update this thread, as I've been dealing with the "shearing" issue for a long time and I'm sure others might run into the same problem, and search the forums for answers.
It seems that the sheared frames ONLY happen when using HDMI out from the camera for monitor viewing.
I don't have a great solution for this, as any professional behind a camera would want to use a monitor for accurate framing, focus-pulling, etc - but at least I've identified the cause after trying and tweaking a million different settings! (The big clue was that it would only happen on location, and never at home when I attempted to troubleshoot this... sans camera rig.)
For now the only thing I can think of is setting up the shot with the monitor, then unplugging it before hitting the record button, then plugging back in for the next take, etc. It's a bit maddening, but better than going through it frame by frame in post to fix jacked up image capture...
Does anyone have any other ideas???