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Thanx a lot for a quick answer.
Now I know what to do helped a lot.

Hello,
I have a problem. Im using 5DMIII , ML 1.2.3 ,  win 8.1 64x. I recorded 2:13 min/sec video - 3331 frames (shown by MlRawViewer 1.3.3) .
When I downloaded the CF card (SanDisk Extreme PRO, 160 mb/s, 64GB) there were only these files:
M08-2042.MLV (3,99GB)
M08-2042.M01 (3,99GB)
M08-2042.M02(3,27GB)
M08-2042.MRX(74KB)
After searching the forum I think Im missing the *.M00 file. 
When Im trying to convert the MLV files through MLRV Converter 1.9.1 - I could get only 1182 frames out of it.
After conversion through MlRawViewer v 1.3.3 - DNG s are lossless Compressed (2MB DNG s instead of 4MB) - I could get only 2520 frames out of the footage.
raw2cdng 1.7.5 - was recognizing and exporting only 1182 frames.
After I renamed the *.M01 file to *.M00 and *.M02 to *.M01 raw2cdng 1.7.5 could recognize all 3331 frames and could export them to 16bit maximized CDNG format.

Questions:
Is this the right way how to do it?
Is there some wrong setting in my  5DMIII camera that does not create the *.M00 file?
Im missing the *.M00 file in about 90% of all footages.
Why is this random creating of *.M00 happening?

Thanx a lot for answer.