Here's an easily added (I'm assuming) solution, that if correctly practiced in the field, will make for easy audio syncing in post.
Ok so there is already an option for the camera to "beep" when it starts recording. If we were to add a feature where instead of just beeping, it would beep a unique "sound code" (a few beeps at various frequencies?) for each take, and save that code in the metadata, a piece of software could be developed that would read the beeps in the audio file, and match it up to the in-point of each video file. It could then either export converted 422/444 files from the MLV file (all in one program??) with the audio synced already, or could export an XML (like PluralEyes).
For this to work, whenever you start a new take in the field, the boom operator (or whoever's doing audio) would have to point the mic at the camera temporarily while the cam operator hits record, so the beep is picked up.
That's pretty much it!
Let me know what you think!