Dave, I was able to replicate the issue after poking through frame by frame. After some testing and mucking around, i'm leaning toward a cs2x2 issue. AE doesn't show the dots because whenever you're working with DNGs it will automaticially run dot remover behind the scenes, thus a clean image. Actually, all adobe tools do this when working with raw/dng. I baked in the black dots using Davinci to export into a prores sequence and took that into AE and that made them visable.
My best suggestion would be to take the source footage and without using cs2x2, or any PDR for that matter, check the frames. Sure it'll have pink dots but it will identify the issue: either Davinci's raw engine is wonky (not that likely) or its cs2x2 (more likely).