Gary, I've been using Rewind's "crop mode" version for any videos I do in 1280x720 and the latest original for everything else and it is working okay as long as I don't shoot any blown out areas.
I have separate folders "PDR", "PDR Rewind Crop Version" with each version. I run the RAW through RAWanizer to see what aspect ratio the clips are, and then PDR accordingly. Though I do everything crop mode now. The other isn't worth the moire risk.
I have a method for generating focus pixels and creating a bad pixel list for dcRAW type convesion, but when PDR works, as Rewind says, that's the best method (it interpolates better than dcRAW). However, i still hope to get that working with the same interpolation method as PDR and incorporate into raw2dng or mlv2dng, etc.
What we really need, for now, is a PDR that has updated drop down selections. I looked at the code but could see it wouldn't be a quick fix for me. I imagine it's a little complicated or Rewind would have done the same. But Rewind, if you can incorporate your crop mode with the earlier stuff that would be optimal.
We need something like
650 Normal
650 Crop
EOS-M Normal
EOS-M Crop
Even if both are the same, would allow adjustments to each if something changes in builds.