@Kim.dh
Why don't you just press the shutter button all the way RIGHT after the bolt gets recorded? You have to do it, sure, and it'll be 16:9, which is somewhat of a bummer, but it'll also be @ whatever quality setting you've set. Large fine yields 5184 x 2912 on 18 MP crop sensor bodies.
I would try THAT and figure out your post processing--masking, blending, etc. If there's any wind at all, the clouds--or trees (if applicable)--will have moved regardless.
The issue I see is the photo mode is controlled mechanically, by the mode dial (60D) or switch. What's the system going to do when you programmatically switch it to photo mode when the dial or switch is in video mode? Has that ever been tried before?
CORRECTION: the 5184 x 2912 is JPG, but in RAW (CR2), it's 5202 x 3465! What is that, ~3:2?